# paper-qa - Doramagic AI Context Pack

> Purpose: pre-work context for the user's host AI. This pack does not prove that the project has been installed, run, or validated.

## Project

- canonical_name: `Future-House/paper-qa`
- capability: High accuracy RAG for answering questions from scientific documents with citations
- expected_user_outcome: High accuracy RAG for answering questions from scientific documents with citations

## Operating Boundaries

- Do not claim that the project has been installed, run, called through an API, or used on local files unless separate evidence proves it.
- Project facts must come from repo evidence, Claim Graph, or explicit source references.
- When a capability is not verified, mark it as unverified instead of completing it as fact.
- publish_status: `publishable`
- blocking_gaps: none

---

## Doramagic Context Augmentation

The following sections strengthen the repository context for a host AI. Human Manual data is a reading route, and pitfall notes become operating constraints.

## Human Manual Outline

Usage rule: this is only a reading route and salience signal, not factual authority. Concrete claims must still return to repo evidence or Claim Graph.

Host AI hard rules:
- Do not treat page titles, section order, summaries, or importance values as factual project evidence.
- When explaining the Human Manual outline, state that it is only a reading route or salience signal.
- Capability, installation, compatibility, runtime state, and risk claims must cite repo evidence, source paths, or Claim Graph.

- **Overview and Quickstart**: importance `high`
  - source_paths: README.md, src/paperqa/__init__.py, CITATION.cff, pyproject.toml
- **Installation and CLI Usage**: importance `high`
  - source_paths: README.md, src/paperqa/agents/main.py, src/paperqa/paths.py, src/paperqa/configs/high_quality.json, src/paperqa/configs/fast.json
- **System Architecture and Data Flow**: importance `high`
  - source_paths: src/paperqa/core.py, src/paperqa/types.py, src/paperqa/llms.py, src/paperqa/prompts.py, src/paperqa/utils.py
- **Agentic Workflow and Tools**: importance `high`
  - source_paths: src/paperqa/agents/main.py, src/paperqa/agents/tools.py, src/paperqa/agents/env.py, src/paperqa/agents/models.py, src/paperqa/agents/search.py

## Repo Inspection Evidence

- repo_clone_verified: true
- repo_inspection_verified: true
- repo_commit: `d7675d7b7eddeb3535e8c260399c5bbeeb818c50`
- inspected_files: `README.md`, `pyproject.toml`, `uv.lock`, `docs/tutorials/querying_with_clinical_trials.md`, `docs/tutorials/running_on_lfrqa.md`, `docs/tutorials/settings_tutorial.md`, `docs/tutorials/where_do_I_get_papers.md`, `packages/paper-qa-docling/README.md`, `packages/paper-qa-docling/pyproject.toml`, `packages/paper-qa-docling/src/paperqa_docling/__init__.py`, `packages/paper-qa-docling/src/paperqa_docling/reader.py`, `packages/paper-qa-docling/tests/test_paperqa_docling.py`, `packages/paper-qa-nemotron/README.md`, `packages/paper-qa-nemotron/pyproject.toml`, `packages/paper-qa-nemotron/src/paperqa_nemotron/__init__.py`, `packages/paper-qa-nemotron/src/paperqa_nemotron/api.py`, `packages/paper-qa-nemotron/src/paperqa_nemotron/reader.py`, `packages/paper-qa-nemotron/tests/cassettes/TestNvidiaAPI.test_detection_only[0].yaml`, `packages/paper-qa-nemotron/tests/cassettes/TestNvidiaAPI.test_detection_only[1].yaml`, `packages/paper-qa-nemotron/tests/cassettes/TestNvidiaAPI.test_markdown_bbox[0].yaml`

Host AI hard rules:
- Without repo_clone_verified=true, do not claim that the source code has been read.
- Without repo_inspection_verified=true, do not write README, docs, or package-file conclusions as facts.
- Without quick_start_verified=true, do not claim that the Quick Start path has run successfully.

## Doramagic Pitfall Constraints

These rules come from Doramagic discovery, validation, or compilation findings. The host AI must treat them as operating constraints, not background notes.

### Constraint 1: Installation risk requires verification

- Trigger: Project evidence flags a installation risk. Review the linked source before relying on this workflow.
- Host AI rule: Reproduce the official install and quickstart path in an isolated environment.
- Why it matters: May increase setup, validation, or first-run risk for the user.
- Evidence: community_evidence:github | https://github.com/Future-House/paper-qa/issues/1330
- Hard boundary: Do not present this pitfall as solved, verified, or ignorable unless later evidence explicitly closes it.

### Constraint 2: Configuration risk requires verification

- Trigger: Project evidence flags a configuration risk. Review the linked source before relying on this workflow.
- Host AI rule: Reproduce the official install and quickstart path in an isolated environment.
- Why it matters: May increase setup, validation, or first-run risk for the user.
- Evidence: community_evidence:github | https://github.com/Future-House/paper-qa/issues/1310
- Hard boundary: Do not present this pitfall as solved, verified, or ignorable unless later evidence explicitly closes it.

### Constraint 3: Capability evidence risk requires verification

- Trigger: README/documentation is current enough for a first validation pass.
- Host AI rule: Reproduce the official install and quickstart path in an isolated environment.
- Why it matters: May increase setup, validation, or first-run risk for the user.
- Evidence: capability.assumptions | https://github.com/Future-House/paper-qa
- Hard boundary: Do not present this pitfall as solved, verified, or ignorable unless later evidence explicitly closes it.

### Constraint 4: Maintenance risk requires verification

- Trigger: Project evidence flags a maintenance risk. Review the linked source before relying on this workflow.
- Host AI rule: Reproduce the official install and quickstart path in an isolated environment.
- Why it matters: May increase setup, validation, or first-run risk for the user.
- Evidence: evidence.maintainer_signals | https://github.com/Future-House/paper-qa
- Hard boundary: Do not present this pitfall as solved, verified, or ignorable unless later evidence explicitly closes it.

### Constraint 5: Security or permission risk requires verification

- Trigger: no_demo
- Host AI rule: Reproduce the official install and quickstart path in an isolated environment.
- Why it matters: May increase setup, validation, or first-run risk for the user.
- Evidence: downstream_validation.risk_items | https://github.com/Future-House/paper-qa
- Hard boundary: Do not present this pitfall as solved, verified, or ignorable unless later evidence explicitly closes it.

### Constraint 6: Security or permission risk requires verification

- Trigger: no_demo
- Host AI rule: Reproduce the official install and quickstart path in an isolated environment.
- Why it matters: May increase setup, validation, or first-run risk for the user.
- Evidence: risks.scoring_risks | https://github.com/Future-House/paper-qa
- Hard boundary: Do not present this pitfall as solved, verified, or ignorable unless later evidence explicitly closes it.

### Constraint 7: Security or permission risk requires verification

- Trigger: Project evidence flags a security or permission risk. Review the linked source before relying on this workflow.
- Host AI rule: Reproduce the official install and quickstart path in an isolated environment.
- Why it matters: May increase setup, validation, or first-run risk for the user.
- Evidence: community_evidence:github | https://github.com/Future-House/paper-qa/issues/399
- Hard boundary: Do not present this pitfall as solved, verified, or ignorable unless later evidence explicitly closes it.

### Constraint 8: Security or permission risk requires verification

- Trigger: Project evidence flags a security or permission risk. Review the linked source before relying on this workflow.
- Host AI rule: Reproduce the official install and quickstart path in an isolated environment.
- Why it matters: May increase setup, validation, or first-run risk for the user.
- Evidence: community_evidence:github | https://github.com/Future-House/paper-qa/issues/1325
- Hard boundary: Do not present this pitfall as solved, verified, or ignorable unless later evidence explicitly closes it.

### Constraint 9: Maintenance risk requires verification

- Trigger: issue_or_pr_quality=unknown。
- Host AI rule: Reproduce the official install and quickstart path in an isolated environment.
- Why it matters: May increase setup, validation, or first-run risk for the user.
- Evidence: evidence.maintainer_signals | https://github.com/Future-House/paper-qa
- Hard boundary: Do not present this pitfall as solved, verified, or ignorable unless later evidence explicitly closes it.

### Constraint 10: Maintenance risk requires verification

- Trigger: release_recency=unknown。
- Host AI rule: Reproduce the official install and quickstart path in an isolated environment.
- Why it matters: May increase setup, validation, or first-run risk for the user.
- Evidence: evidence.maintainer_signals | https://github.com/Future-House/paper-qa
- Hard boundary: Do not present this pitfall as solved, verified, or ignorable unless later evidence explicitly closes it.
